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What Are the Risks of Contracting Diseases Associated with Chickens?1

Roxanne Connelly, Christopher Mores, and Amy H. Simonne2

Human and Animal Diseases

Some diseases of animals are communicable to humans. The microorganisms that cause disease can be protozoal, fungal, bacterial, chlamydial, or viral. Some examples of avian diseases transmissible to humans include Chlamydiosis from parakeets, pigeons, and parrots and Cryptococcosis from pigeons. Salmonella, Escherichia coli, the viruses that cause Avian Influenza, and some encephalitis viruses are associated with chickens.

Educational embryology projects such as those offered by 4-H groups (Renner and Ouart 2005) allow children to learn how life develops through observing eggs in an incubator. The projects require daily handling of the eggs and limited handling of the new-born chick. While nothing is risk-free, the risk of contracting Avian Influenza, Salmonella, E. coli, or mosquito-borne encephalitis by participating in embryology projects is extremely small.

Figure 1. 

Candling eggs. Educational embryology projects such as those offered by 4-H groups allow children to learn how life develops through observing eggs in an incubator.


Alan Hagan.

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Avian Influenza

Infected birds shed flu virus in their saliva, nasal secretions, and feces. Susceptible birds become infected when they have contact with contaminated excretions or surfaces that are contaminated with excretions. It is believed that most cases of bird flu infection in humans have resulted from contact with infected poultry or contaminated surfaces.

  • There is no evidence to indicate that Avian Influenza is transmitted vertically, from hen into the egg. Chicks are not born with Avian Influenza. Many educational projects, like the 4-H embryology project, begin with clean eggs from a known supplier.

  • Poultry originating from areas of the world where there are strains of the disease are prohibited from entering the US, and all commercial poultry entering Florida from other states are required to have a permit for entry and must originate from influenza-free flocks.

  • The Florida Department of Agriculture, Division of Animal Industry, has authorized agents trained to collect samples, and testing to determine the presence of the disease is being conducted at two of the Department's animal health laboratories. Samples are regularly collected from backyard flocks and commercial poultry breeding flocks, and the state has a voluntary surveillance and testing program.

  • Veterinarians, veterinary laboratories, and those working with birds in Florida are required to report suspected cases of Avian Influenza to the Commissioner of the Florida Department of Agriculture and Consumer Services. Quarantine and other emergency plans are in place to eradicate such a disease as quickly as possible if Avian Influenza is detected.

E. Coli and Salmonella

Both E. coli and Salmonella are bacteria from the Enterobacteriaceae family, which are commonly found in the intestinal tracts of animals.

Salmonella are widespread in the environment and are associated with all animal species including mammals, birds, reptiles, and amphibians. Multiple outbreaks of Salmonellosis associated with handling ducklings, chicks, and baby chicks among children have been reported in recent years in many states (CDC 2005; CDC 2016; Gaffga et al. 2012; MMWR 1997;) thus a risk of contracting Salmonella from chicks is always present. However, the risk can be reduced by avoiding contact with feces from these animals, carefully washing hands with soap and water after handling these animals, and avoiding hand-to-mouth contact.

Escherichia coli or E. coli is usually found in the digestive system of healthy humans and animals, and is transmitted through fecal contamination and contaminated foods and water. There are hundreds of known E. coli strains, but most of them are not disease-causing (pathogenic) strains. Illness from the pathogenic strains can range from very mild diarrhea to severe bloody diarrhea with Hemolytic Uremic Syndrome (HUS), leading to kidney failure and death. The E. coli O157:H7 was the source of an outbreak of several cases of E. coli O157:H7 / HUS in Florida in 2005. However, the bacteria came from animals that were part of a petting zoo exhibit at local fairs. There has not been a reported case of E. coli infection from chicks. Although E. coli are typically found in cattle, this organism is often used as an indicator for fecal contamination in both meat and poultry processing plants.

Some of the following prevention tips will help reduce the exposure E. coli and Salmonella or reduce the risk of infection by E. coli and Salmonella by chicks:

  • The setting of very clean eggs in a sanitized incubator can reduce the potential for a problem.

  • Keep the incubator away from food preparation or eating areas and sanitize the area often.

  • Avoiding contact with feces from the chicks or other animals.

  • Wash your hands and those of your children with soap and water immediately after touching any eggs and chicks. If soap and water are not available, use alcohol-based hand wipes and gels. Although E. coli and Salmonella can be found in young fowl, transmission from chicks to humans can be minimized by the aforementioned means.

  • Supervise children when handling eggs or baby birds. Do not allow children to nuzzle or kiss chicks, touch their mouths with their hands, or to eat or drink before washing their hands thoroughly.

If any of the children have high fever, severe diarrhea or other symptoms, contact a health care provider.

Figure 2. 

A risk of contracting Salmonella from chicks is always present. However, the risk can be reduced by avoiding contact with feces from these animals, carefully washing hands with soap and water after handling these animals, and avoiding hand-to-mouth contact.



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Encephalitis Viruses

Eastern equine encephalitis (EEE), St. Louis encephalitis (SLE), and West Nile (WN) viruses are present in populations of wild birds in Florida. The birds become infected through the bite of a virus-carrying mosquito. These viruses cannot be transmitted from person to person or from consumption of chicken eggs or meat. There is a risk that some infected birds can transmit the virus to humans under certain strict circumstances.

Any person living in Florida has the potential to be bitten by infected mosquitoes, and a small percentage of these people can become sick from one of these viruses. The Florida Department of Health and many Florida mosquito control districts use adult chickens to monitor these viruses. These birds are considered sentinel chickens. The advantage of using chickens as sentinels for these viruses is that they are maintained in chicken coops similar to those used on farms, and if bitten by an infected mosquito, the chicken does not get sick. They form antibodies to the viruses and by testing their blood, health officials will know when there is an increase of virus in the area and can provide an early warning to humans to protect themselves from mosquito bites. However, it is important to remember that these birds are maintained outdoors in areas where they are exposed to mosquitoes. This is not the case with many educational projects such as the 4-H embryology project.

  • EEE, SLE, and WN are transmitted to humans through the bite of an infected mosquito.

  • For any chicken to be infected with the viruses that cause encephalitis, the chick would have to be outdoors, exposed to infected mosquitoes, and be bitten by an infected mosquito. Because chicks and eggs used for educational purposes are incubated and hatched in the classroom, the chicks are not exposed to infected mosquitoes, and therefore can NOT infect a human with any of these viruses.

  • The mosquito-borne viruses that cause encephalitis are not vertically transmitted from the hen to the embryo.

  • There is no evidence that newly-hatched chicks could transmit these viruses to humans.

Figure 3. 

Sentinel chickens.


Jim Mason, courtesy of Indian River Mosquito Control District

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Safety Measures

Educational projects like 4-H Embryology should include a workbook containing safety measures to ensure the health of the chicks and those handling the chicks and egg to include:

  • Wash and disinfect the incubator before operating.

  • Order eggs from a known, reliable source to ensure eggs and chicks are disease free.

  • Ensure clean eggs are used in the projects.

  • Infertile eggs and dead embryos should be removed as soon as they are observed.

  • Since the primary place of exposure to Salmonella is in the home, wash hands prior to handling the eggs or birds in the classroom.

  • Wash hands following direct or indirect contact with animals.

  • Teach good hygiene habits to reduce the risk of E. coli and Salmonella infections.

Adherence to these simple precautions will greatly reduce the already small chance of exposure to these pathogens. Small children unable to follow these precautions should not be allowed to handle the chicks or eggs unless they are individually supervised.

Figure 4. 

Proper handwashing for school children.


From FCS8783, Proper Hand Washing for School Children.

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Butcher, B. D. and R. Miles. 2003. St. Louis encephalitis—the role of chickens. Gainesville: University of Florida Institute of Food and Agricultural Sciences. (15 June 2016).

Centers for Disease Control and Prevention. 2005. Key facts about Avian Influenza (Bird Flu) and Highly Pathogenic Avian Influenza A (H5N1) virus. (15 June 2016).

Centers for Disease Control and Prevention. 2013. Risk of Human Salmonella infections from Live Baby Poultry. (15 June 2016).

Centers for Disease Control and Prevention. 2015. Salmonella Infection (salmonellosis) and Animals. (15 June 2016).

Centers for Disease Control and Prevention. 2016. Seven multistate outbreaks of human Salmonella infections linked to live poultry in backyard flocks. (16 June 2016).

Gaffga, N. H. et al. 2012. Outbreak of salmonellosis linked to live poultry from a mail-order hatchery. New England Journal of Medicine. 366(22):2065–73. (15 June 2016).

MMWR. 1997. Salmonella Serotype Montevideo Infections Associated with Chicks—Idaho, Washington, and Oregon, Spring 1995 and 1996. 46(11).

Renner, R. L. and M. D. Ouart. 2005. 4-H Embryology Project Manual. Gainesville: University of Florida Institute of Food and Agricultural Sciences. (15 June 2016).



This document is ENY724, one of a series of the Department of Entomology and Nematology, UF/IFAS Extension. Original publication date September 2005. Revised April 2013 and June 2016. Visit the EDIS website at


Roxanne Connelly, professor, Department of Entomology and Nematology, Florida Medical Entomology Laboratory; Christopher Mores, associate professor, Louisiana State University, Baton Rouge, LA; and Amy H. Simonne, professor, Department of Family, Youth and Community Sciences; UF/IFAS Extension, Gainesville, FL 32611.

The Institute of Food and Agricultural Sciences (IFAS) is an Equal Opportunity Institution authorized to provide research, educational information and other services only to individuals and institutions that function with non-discrimination with respect to race, creed, color, religion, age, disability, sex, sexual orientation, marital status, national origin, political opinions or affiliations. For more information on obtaining other UF/IFAS Extension publications, contact your county's UF/IFAS Extension office.

U.S. Department of Agriculture, UF/IFAS Extension Service, University of Florida, IFAS, Florida A & M University Cooperative Extension Program, and Boards of County Commissioners Cooperating. Nick T. Place, dean for UF/IFAS Extension.