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Ganoderma Wood-Rotting Fungi on Citrus Stumps

Stephen H. Futch, James H. Graham, Larry W. Duncan and L. W. Timmer

Wood-rotting fungi are present in Florida citrus groves as well as in other citrus-producing regions around the world. Some of the early reports by Reichert (1932) described a problem associated with fine-textured soils where wooden stakes of chestnut, oak, or eucalyptus infected with wood-rotting fungi were used to brace up citrus trees on sweet lime rootstock in Palestine. In Florida, L. C. Knorr (1973) identified Ganoderma sessilis, currently synonymous with G. lucidum, as a fungal agent that invaded healthy citrus wood and was also isolated from trees with heart rot. In south Texas, Skaria and Farrald (1989) reported 'Marrs' early orange trees on sour orange rootstock were infected with G. lucidum when replanted into a freeze-killed grove in 1984. Prior to planting the new trees, the freeze-killed trees were cut off above the soil line, leaving the stumps and root systems in place. Later, Skaria et al. (1990) found Ganoderma in replants on Cleopatra mandarin and Swingle citrumelo at other freeze-damaged locations in south Texas. According to the APS book, Fungi on Plant and Plant Products in the United States (Farr et al. 1989), there are three species of Ganoderma reported on citrus, i.e. G. applanatum, G. brownii, and G. lucidum (Farr et al. 1989). Ganoderma brownii has been found only in California. The species encountered in this Florida study and pictured in Figures 1–3 is G. applanatum.

Some Ganoderma species are saprophytic, whereas others are wound pathogens that invade and kill the sapwood, causing heart rot or butt rot. Affected trees will exhibit varying degrees and combinations of dieback, loss of foliage coloration, and generally unhealthy appearance. Eventually, the tree declines or dies. Ganoderma spp. and other fungal species are also found on dead tree trunks or roots of many other plants, including oak and pine. The fungi can spread via airborne spores (basidiospores) or through root grafting from infected to healthy tree roots. When Ganoderma spp. infect main or lateral roots, they form a whitish mat of mycelium under the bark that later turns brown. The white mycelium progresses upward on crown roots to the trunk, where the fungus develops strands or ribbons called rhizomorphs. These structures produce fan-shaped fruiting bodies called brackets or semicircular conks at or near the base of the tree (Figure 1). These brackets may be either stalked or sessile. With time, the infected roots and trunk wood become spongy, decompose, and disintegrate.

Figure 1. Tree with G. applanatum on tree trunk.
Figure 1.  Tree with G. applanatum on tree trunk.

Spores of Ganoderma are released from the brackets and conks, which may vary in size from 2 to 30 inches wide and 1 to 8 inches thick. These semicircular fruiting bodies produce millions of spores that are released over a five- to six-month period (Buller 1922). Spores can be released under a variety of environmental conditions. When the soil is dry, the bracket derives its moisture from the tree to enable the continuation of spore release.

By the time the tree shows visual symptoms of infection, it is usually too late to control fungal invasion and damage (Figure 1). If the fungus is restricted to the heartwood, only the structural integrity of the tree is impaired. The infection may result in limb or trunk breakage due to wind or tree weight. Otherwise, trees with heart rot may remain productive for many years.

The previous recommendation to reduce the incidence of Ganoderma was to remove all wood (stumps and roots) from the soil prior to planting new trees. These materials (stumps and roots) provide an inoculum base for the fungi. While this is still valid, there is a higher cost associated with complete tree removal compared to clipping the trees above the soil line and leaving the stump in the soil. Many growers are successfully clipping trees as a way to reduce replant costs without a major impact on young tree replant growth.

In recent years, brackets of G. applanatum (Figure 2) have occasionally been noted on citrus tree stumps that remain after clipping. The number of brackets per tree stump may range from one to several that vary in size and shape.

Figure 2. Tree stump with G. applanatum.
Figure 2.  Tree stump with G. applanatum.

In three studies around the state (Arcadia, Frostproof, and east of Okeechobee), citrus resets in the first three years after planting appear to be healthy and free of infection from Ganoderma regardless of the tree removal method (clipping tree above the soil surface or complete removal of the tree and roots from the soil) (Figure 3).

Figure 3. Study site where clipped tree bears conks of G. applanatum.
Figure 3.  Study site where clipped tree bears conks of G. applanatum.



Buller, A. H. R. 1922. Researches on Fungi 2. 492 pp. Longmans, Green & Co., London.

Farr, D. F., G. F. Bills, G. P. Chamuris, and A. Y. Rossman. 1989. Fungi on Plant and Plant Products in the United States. St. Paul, MN: APS Press.

Futch, S. H., J. H. Graham, and L. W. Duncan. 2008. "Citrus Tree Removal Method Does Not Affect Performance of Reset Trees". Hort Technology 18:559–562.

Knorr, L. C. 1973. Citrus Diseases and Disorders. Gainesville, FL: University Presses of Florida. pp. 103–105

Reichert, I. 1932. "A New Root Rot of Citrus in Palestine". Hadow. 5: 254–256.

Skaria, M., and C. Farrald. 1989. "Biological and Cultural Factors Associated with Citrus Replant Problems in Texas". Phytopathology 79(10): 1193. Abstr. #A465.

Skaria, M., G. S. Smith, and R. L. Gilbertson. 1990. "Root Rot of Young Citrus Caused by a Species of Ganoderma lucidum Complex". Phytopathology 80(10): 974. Abstr. #A130.

Publication #HS1019

Release Date:October 27, 2020

Reviewed At:January 9, 2024

Related Experts

Graham, James H.


University of Florida

Duncan, Larry Wayne


University of Florida

Timmer, Lavern W 'Pete'


University of Florida

Futch, Stephen H.

University of Florida

Fact Sheet

About this Publication

This document is HS1019, one of a series of the Horticultural Sciences Department, UF/IFAS Extension. Original publication date March 2006. Revised April 2016. Visit the EDIS website at for the currently supported version of this publication.

About the Authors

Stephen H. Futch, Extension agent IV emeritus; James H. Graham, professor emeritus, Plant Pathology Department; Larry W. Duncan, professor, Entomology and Nematology Department; and L. W. Timmer, professor emeritus, Plant Pathology Department, UF/IFAS Citrus Research and Education Center; UF/IFAS Extension, Gainesville, FL 32611.


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