Fusarium Crown and Root Rot of Tomato in Florida1

S. Zhang, P. D. Roberts, R. J. McGovern, and L. E. Datnoff 2

Fusarium crown and root rot, caused by the fungus Fusarium oxysporum f. sp. radicis-lycopersici (FORL) was first detected in Florida in 1974. The disease has been reported in all major tomato growing areas of the state, but is particularly serious in the acidic, sandy soils of Florida's southern production regions. Fusarium crown and root rot has also occurred in Canada, Mexico, Israel, Japan, many countries in Europe, and other states in this country including California, New Jersey, New York, New Hampshire, Ohio, Pennsylvania, and Texas. It is a serious problem for seedling and greenhouse fruit production, and can cause significant yield decreases in field-grown, staked tomatoes in Florida.


The fungus invades susceptible plants through wounds and natural openings created by newly emerging roots. Early symptoms caused by FORL in tomato seedlings include stunting, yellowing, and premature loss of cotyledons and lower leaves. A pronounced brown lesion that girdles the hypocotyl (root/shoot junction), root rot, wilting, and death are advanced symptoms (Figure 1).

Figure 1. Infected tomato transplants (left and center) next to healthy transplant (right).
Figure 1.  Infected tomato transplants (left and center) next to healthy transplant (right).

Infected plants in the field may be stunted, and as they begin to heavily bear fruit, their lower leaves turn yellow and wilt. Wilting first occurs during the warmest part of the day, and plants appear to recover at night. Infected plants may either totally wilt and die, or persist in a weakened state, producing reduced numbers of inferior fruit (Figure 2).

Figure 2. Wilted tomato plants infected with Fusarium crown rot fungus.
Figure 2.  Wilted tomato plants infected with Fusarium crown rot fungus.

The tap root of infected plants often rots entirely, and chocolate brown cankers appear at the soil line (Figure 3). When diseased plants are sectioned lengthwise, extensive brown discoloration and rot are evident in the cortex of the crown and roots (Figure 4). In comparison with the related fungus F. oxysporum f. sp. lycopersici (FOL), which causes Fusarium wilt, FORL produces less extensive discoloration in the plants water-conducting tissue; the brown streaks observed, extend less then 20 to 30 cm. (8 to 12 in.) above the soil line. Round, brown lesions are evident at the origins of rotted lateral roots. An abnormal proliferation of adventitious roots may occur above the infected region. The fungus produces masses of white mycelium and yellow to orange spores in necrotic stem lesions on dead and dying plants.

Figure 3. Canker on stem at soil line.
Figure 3.  Canker on stem at soil line.

Figure 4. Internal discoloration of the crown and root rot. (Note missing taproot).
Figure 4.  Internal discoloration of the crown and root rot. (Note missing taproot).

Ecology and Epidemiology

In further contrast to Fusarium wilt, crown and root rot is favored by cool temperatures (10°C to 20°C/50°F to 68°F). Low soil pH, ammoniacal nitrogen, and water-logged soil also exacerbate the disease. The causal fungus produces three types of spores: macroconidia, microconidia and chlamydospores. Two of these spores figure prominently in the survival and spread of FORL. Microconidia form in great abundance in necrotic tissue, are spread by air currents, and readily reinfest soil sterilized by heat or broad spectrum biocides such as fumigants. Chlamydospores have thicker walls and enable the fungus to survive in the soil and wooden stakes for more than one cropping season.

Lateral spread of the pathogen from plant to plant is primarily by root contact as seen as the clustering of symptomatic plants within beds . Movement of the fungus in the soil in the absence of roots is minimal (< 2.5 cm/1 in.). Long-range dissemination of FORL can occur through infected transplants and perhaps via chlamydospores in soil particles on contaminated shoes, plant stakes, machinery, transplant trays, and other equipment.

Figure 5. Lateral spread of Fusarium oxysporum f.sp. radicis-lycopersici within a planting bed.
Figure 5.  Lateral spread of Fusarium oxysporum f.sp. radicis-lycopersici within a planting bed.

Recent analysis of a population of FORL isolates by vegetative compatibility grouping (VCG) and molecular techniques showed that VCG 0094 is predominant in Florida. Two other VCGs, 0091 and 0098, are present at low frequencies. Within the VCG 0094 population, isolates from the east coast are distinct from west coast. The VCG and genetic analysis results indicate that FORL was probably introduced in Palm Beach Co., FL and moved to other parts of the state and probably also to Europe.

Resistance has been successfully bred into a number of greenhouse and field tomatoes. The fungus may also infect and cause small lesions in the roots of pepper and eggplant, but apparently does not infect potato. Surprisingly, a number of nonsolanaceous plants, including spinach, beets, many legumes, and certain cucurbits may be infected by FORL. The fungus has also been isolated either naturally or experimentally from the roots of a number of weeds, including Brazilian Pepper (Schinus terebinthifolius), Carpet Weed (Mollugo verticillata), Chickweed (Stellaria media), Corn Spurry (Spergula arvense), Cudweed (Gnaphatium sp.), Curly Dock (Rumex crispus), Narrow Leaved Plantain (Plantago lanceolata), Redroot Pigweed (Amaranthus retroflexus), Scoparia sp., Shepards purse (Capsella bursa-pastoris), and Wild Buckwheat (Polygonum convulvulus). Monocots, such as corn, apparently are not susceptible.

Integrated Management

At present, Fusarium crown and root rot is difficult to control in field-grown tomatoes because the pathogen rapidly colonizes sterilized soil and persists for long periods. However, an integration of the following management procedures may help to reduce the impact of crown and root rot:

  1. Use disease-free transplants. Transplant houses should not be located near tomato production fields. Avoid over watering, which makes the transplants more susceptible to crown and root rot. Disinfect transplant trays by steaming before reuse.

  2. Use a preplant fumigant. The soil should be of good tilth and adequately moist for at least two weeks prior to fumigation. Use an appropriate chisel spacing and depth, and immediately cover the bed with plastic mulch following fumigation.

  3. Optimize cultural practices in the field. Avoid injuring transplants when they are set in the field. Physical damage and injury from excessive soluble salts may make young plants more susceptible to crown and root rot. The use of water drawn from wells rather than ditches for watering-in transplants may help to prevent recontamination of fumigated soil. Avoid ammoniacal nitrogen and maintain the soil pH at 6 to 7. Rapidly plow in crop debris following final harvest. Disinfest tomato stakes before reuse, or use new stakes.

  4. Rotate with a nonsusceptible crop. Incomplete knowledge of the host range of FORL makes precise recommendations in this area difficult. Current research data suggests that leguminous crops should be avoided in favor of corn and similar crops. Rotation and intercropping with lettuce had reduced FORL in greenhouse-grown tomatoes.

  5. Significant progress has been made in breeding for resistance to Fusarium crown and root rot in field-grown tomatoes. Although the commonly used commercial varieties do not have resistance, some resistant cultivars, such as Conquest, are available for field use.

  6. Additional management strategies under investigation include the use of biological control, cover crops, and soil solarization alone or in combination with fumigants.


1. This document is PP52 (formerly SP184.), one of a series of the Plant Pathology Department, UF/IFAS Extension. Original publication date September 2001. Revised June 2015. Reviewed March 2018. Visit the EDIS website at https://edis.ifas.ufl.edu.
2. S. Zhang, associate professor, UF/IFAS Tropical Research and Education Center; P. D. Roberts, professor, UF/IFAS Southwest Florida Research and Education Center; R.J. McGovern, retired professor, Plant Pathology Department; L. E. Datnoff, former professor, Plant Pathology Department; UF/IFAS Extension, Gainesville, FL 32611.